Probably won't work in Whonix 13. You need to wait for Whonix 14.
Connecting to Tor before ZeroNet
User -> Tor -> ZeroNet -> Internet
Update your package lists.
sudo apt-get update
sudo apt-get install python-msgpack git
git clone https://github.com/HelloZeroNet/ZeroNet.git
Get into Zeronet folder.
Start ZeroNet. - Does not work yet! 
To reconfigure Tor Browser so you can access the local web interface, apply the following six steps.
Step one) Terminate Tor Browser if currently running.
echo 'pref("xpinstall.signatures.required", false);' > /home/user/.tb/tor-browser/Browser/TorBrowser/Data/Browser/profile.default/preferences/50_addons_unsigned_allow.js
Step three) Install FoxyProxy:
sudo apt-get install xul-ext-foxyproxy-standard
Step four) To access the proxy/local WebUI of the desired application, the FoxyProxy add-on and its configuration need to be made available to Tor Browser. Run:
ln -s /usr/share/xul-ext/foxyproxy-standard/ /home/user/.tb/tor-browser/Browser/TorBrowser/Data/Browserfirstname.lastname@example.org
cp /usr/share/usability-misc/tbb-foxyproxy/foxyproxy.xml /home/user/.tb/tor-browser/Browser/TorBrowser/Data/Browser/profile.default/
Step six) Restart Tor Browser.
To find out how to reverse this Tor Browser configuration and to restore Tor Browser's default fingerprint, please press expand on the right side.
Note: Tor Browser will soon ship with sandboxing as opt-in, unfortunately this feature's initial versions are incompatible with such configurations and must not be enabled.
Start Tor Browser.
You won't be able to use the following specialized Tor mode, you won't be able to use
--tor alwaysin Whonix 13.
./zeronet.py --tor always
- This doesn't lower security too much - unless you install add-ons from unsafe sources. It is required because Tor Browser is based on a newer version of Firefox while the add-ons in Debian are "unsigned". They are signed and verified when apt-get downloads them, so this is safe, but they do not have the signature that Firefox's code is expecting. (It wouldn't make them safer anyhow.)
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